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Students and postdocs are indicated with a §.
Type
Conference paper
Journal article
Date
2023
2022
2021
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2014
2012
Reverse engineering environmental metatranscriptomes clarifies best practices for eukaryotic assembly
Arianna I. Krinos
§
,
Natalie R. Cohen
,
Michael J. Follows
,
Harriet Alexander
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DOI
Microbiomes of bloom-forming Phaeocystis algae are stable and consistently recruited, with both symbiotic and opportunistic modes
Margaret Mars Brisbin
§
,
Satoshi Mitarai
,
Mak A Saito
,
Harriet Alexander
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DOI
Marine microeukaryote metatranscriptomics: sample processing and bioinformatic workflow recommendations for ecological applications
Natalie Cohen
,
Harriet Alexander
,
Arianna Krinos
§
,
Sarah K Hu
,
Robert H Lampe
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DOI
Bio-GO-SHIP: The Time Is Right to Establish Global Repeat Sections of Ocean Biology
Sophie Clayton
,
Harriet Alexander
,
Jason R Graff
,
Nicole J Poulton
,
Luke R Thompson
,
Heather Benway
,
Emmanuel Boss
,
Adam Martiny
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DOI
The osmolyte ties that bind: genomic insights into synthesis and breakdown of organic osmolytes in marine microbes
Erin L. McParland
,
Harriet Alexander
,
Winifred M. Johnson
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DOI
EUKulele: Taxonomic annotation of the unsung eukaryotic microbes
Arianna I Krinos
§
,
Sarah K Hu
,
Natalie R Cohen
,
Harriet Alexander
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DOI
DMSP synthesis genes distinguish two types of DMSP producer phenotypes
Erin L. McParland
,
Michael D. Lee
,
Eric A. Webb
,
Harriet Alexander
,
Naomi M. Levine
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DOI
Auxotrophic interactions: A stabilizing attribute of aquatic microbial communities?
Winifred M Johnson
,
Harriet Alexander
,
Raven L Bier
,
Dan R Miller
,
Mario E Muscarella
,
Kathleen J Pitz
,
Heidi Smith
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DOI
Transcriptional response of Emiliania huxleyi under changing nutrient environments in the North Pacific Subtropical Gyre
Harriet Alexander
,
Mónica Rouco
,
Sheean T Haley
,
Sonya T Dyhrman
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DOI
Re-assembly, quality evaluation, and annotation of 678 microbial eukaryotic reference transcriptomes
Lisa K Johnson
,
Harriet Alexander
,
C Titus Brown
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DOI
Keeping it light: (Re)analyzing community-wide datasets without major infrastructure
Harriet Alexander
,
Lisa K Johnson
,
C Titus Brown
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DOI
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
Evan Bolyen
,
Jai Ram Rideout
,
Matthew R Dillon
,
Nicholas A Bokulich
,
Christian Abnet
,
Gabriel A Al-Ghalith
,
Harriet Alexander
,
Eric J Alm
,
Manimozhiyan Arumugam
,
Francesco Asnicar
,
Yang Bai
,
Jordan E Bisanz
,
Kyle Bittinger
,
Asker Brejnrod
,
Colin J Brislawn
,
C Titus Brown
,
Benjamin J Callahan
,
Andrés Mauricio Caraballo-Rodríguez
,
John Chase
,
Emily Cope
,
Ricardo Da Silva
,
Pieter C Dorrestein
,
Gavin M Douglas
,
Daniel M Durall
,
Claire Duvallet
,
Christian F Edwardson
,
Madeleine Ernst
,
Mehrbod Estaki
,
Jennifer Fouquier
,
Julia M Gauglitz
,
Deanna L Gibson
,
Antonio Gonzalez
,
Kestrel Gorlick
,
Jiarong Guo
,
Benjamin Hillmann
,
Susan Holmes
,
Hannes Holste
,
Curtis Huttenhower
,
Gavin Huttley
,
Stefan Janssen
,
Alan K Jarmusch
,
Lingjing Jiang
,
Benjamin Kaehler
,
Kyo Bin Kang
,
Christopher R Keefe
,
Paul Keim
,
Scott T Kelley
,
Dan Knights
,
Irina Koester
,
Tomasz Kosciolek
,
Jorden Kreps
,
Morgan GI Langille
,
Joslynn Lee
,
Ruth Ley
,
Yong-Xin Liu
,
Erikka Loftfield
,
Catherine Lozupone
,
Massoud Maher
,
Clarisse Marotz
,
Bryan D Martin
,
Daniel McDonald
,
Lauren J McIver
,
Alexey V Melnik
,
Jessica L Metcalf
,
Sydney C Morgan
,
Jamie Morton
,
Ahmad Turan Naimey
,
Jose A Navas-Molina
,
Louis Felix Nothias
,
Stephanie B Orchanian
,
Talima Pearson
,
Samuel L Peoples
,
Daniel Petras
,
Mary Lai Preuss
,
Elmar Pruesse
,
Lasse Buur Rasmussen
,
Adam Rivers
,
II Michael S Robeson
,
Patrick Rosenthal
,
Nicola Segata
,
Michael Shaffer
,
Arron Shiffer
,
Rashmi Sinha
,
Se Jin Song
,
John R Spear
,
Austin D Swafford
,
Luke R Thompson
,
Pedro J Torres
,
Pauline Trinh
,
Anupriya Tripathi
,
Peter J Turnbaugh
,
Sabah Ul-Hasan
,
Justin JJ van der Hooft
,
Fernando Vargas
,
Yoshiki Vázquez-Baeza
,
Emily Vogtmann
,
Max von Hippel
,
William Walters
,
Yunhu Wan
,
Mingxun Wang
,
Jonathan Warren
,
Kyle C Weber
,
Chase HD Williamson
,
Amy D Willis
,
Zhenjiang Zech Xu
,
Jesse R Zaneveld
,
Yilong Zhang
,
Rob Knight
,
J Gregory Caporaso
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DOI
Transcriptional patterns identify resource controls on the diazotroph Trichodesmium in the Atlantic and Pacific oceans
Mónica Rouco
,
Kyle R. Frischkorn
,
Sheean T. Haley
,
Harriet Alexander
,
Sonya T. Dyhrman
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DOI
Shifting metabolic priorities among key protistan taxa within and below the euphotic zone
Sarah K Hu
,
Zhenfeng Liu
,
Harriet Alexander
,
Victoria Campbell
,
Paige E Connell
,
Sonya T Dyhrman
,
Karla B Heidelberg
,
David A Caron
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DOI
What are the type, direction, and strength of species, community, and ecosystem responses to warming in aquatic mesocosm studies and their dependency on experimental characteristics? A systematic review protocol
Tamar Guy-Haim
,
Harriet Alexander
,
Tom W. Bell
,
Raven L. Bier
,
Lauren E. Bortolotti
,
Christian Briseño-Avena
,
Xiaoli Dong
,
Alison M. Flanagan
,
Julia Grosse
,
Lars Grossmann
,
Sarah Hasnain
,
Rachel Hovel
,
Cora A. Johnston
,
Dan R. Miller
,
Mario Muscarella
,
Akana E. Noto
,
Alexander J. Reisinger
,
Heidi J. Smith
,
Karen Stamieszkin
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DOI
Transcriptional response of the harmful raphidophyte Heterosigma akashiwo to nitrate and phosphate stress
Sheean T. Haley
,
Harriet Alexander
,
Andrew R. Juhl
,
Sonya T. Dyhrman
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DOI
Conserved transcriptional responses to nutrient stress in bloom-forming algae
Matthew J. Harke
,
Andrew R. Juhl
,
Sheean T. Haley
,
Harriet Alexander
,
Sonya T. Dyhrman
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DOI
Virus-host relationships of marine single-celled eukaryotes resolved from metatranscriptomics
Mohammad Moniruzzaman
,
Louie L. Wurch
,
Harriet Alexander
,
Sonya T. Dyhrman
,
Christopher J. Gobler
,
Steven W. Wilhelm
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DOI
Phosphorus availability regulates intracellular nucleotides in marine eukaryotic phytoplankton
Elizabeth B Kujawinski
,
Krista Longnecker
,
Harriet Alexander
,
Sonya T Dyhrman
,
Cara L Fiore
,
Sheean T Haley
,
Winifred M Johnson
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DOI
Integrating 'big data' into aquatic ecology: Challenges and opportunities
Jennifer M. Durden
,
Jessica Y. Luo
,
Harriet Alexander
,
Alison M. Flanagan
,
Lars Grossmann
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DOI
Probing the evolution, ecology and physiology of marine protists using transcriptomics
David A. Caron
,
Harriet Alexander
,
Andrew E. Allen
,
John M. Archibald
,
E. Virginia Armbrust
,
Charles Bachy
,
Callum J. Bell
,
Arvind Bharti
,
Sonya T. Dyhrman
,
Stephanie M. Guida
,
Karla B. Heidelberg
,
Jonathan Z. Kaye
,
Julia Metzner
,
Sarah R. Smith
,
Alexandra Z. Worden
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DOI
Variable depth distribution of Trichodesmium clades in the North Pacific Ocean
Mónica Rouco
,
Sheean T. Haley
,
Harriet Alexander
,
Samuel T. Wilson
,
David M. Karl
,
Sonya T. Dyhrman
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DOI
Functional group-specific traits drive phytoplankton dynamics in the oligotrophic ocean
Harriet Alexander
,
Mónica Rouco
,
Sheean T. Haley
,
Samuel T. Wilson
,
David M. Karl
,
Sonya T. Dyhrman
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DOI
Metatranscriptome analyses indicate resource partitioning between diatoms in the field
Harriet Alexander
,
Bethany D. Jenkins
,
Tatiana A. Rynearson
,
Sonya T. Dyhrman
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DOI
Sixty Years of Sverdrup: A Retrospective of Progress in the Study of Phytoplankton Blooms
Alexis Fischer
,
Emily Moberg
,
Harriet Alexander
,
Emily Brownlee
,
Kristen Hunter-Cevera
,
Kathleen Pitz
,
Sarah Rosengard
,
Heidi Sosik
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DOI
The transcriptome and proteome of the diatom Thalassiosira pseudonana reveal a diverse phosphorus stress response
Sonya T Dyhrman
,
Bethany D Jenkins
,
Tatiana A Rynearson
,
Mak A Saito
,
Melissa L Mercier
,
Harriet Alexander
,
Leann P Whitney
,
Andrea Drzewianowski
,
Vladimir V Bulygin
,
Erin M Bertrand
,
Zhijin Wu
,
Claudia Benitez-Nelson
,
Abigail Heithoff
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DOI
Identifying reference genes with stable expression from high throughput sequence data
Harriet Alexander
,
Bethany D Jenkins
,
Tatiana A Rynearson
,
Mak A Saito
,
Melissa L Mercier
,
Sonya T Dyhrman
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