Publications | Alexander Lab @ WHOI

Evan Bolyen, Jai Ram Rideout, Matthew R Dillon, Nicholas A Bokulich, Christian Abnet, Gabriel A Al-Ghalith, Harriet Alexander, Eric J Alm, Manimozhiyan Arumugam, Francesco Asnicar, Yang Bai, Jordan E Bisanz, Kyle Bittinger, Asker Brejnrod, Colin J Brislawn, C Titus Brown, Benjamin J Callahan, Andrés Mauricio Caraballo-Rodríguez, John Chase, Emily Cope, Ricardo Da Silva, Pieter C Dorrestein, Gavin M Douglas, Daniel M Durall, Claire Duvallet, Christian F Edwardson, Madeleine Ernst, Mehrbod Estaki, Jennifer Fouquier, Julia M Gauglitz, Deanna L Gibson, Antonio Gonzalez, Kestrel Gorlick, Jiarong Guo, Benjamin Hillmann, Susan Holmes, Hannes Holste, Curtis Huttenhower, Gavin Huttley, Stefan Janssen, Alan K Jarmusch, Lingjing Jiang, Benjamin Kaehler, Kyo Bin Kang, Christopher R Keefe, Paul Keim, Scott T Kelley, Dan Knights, Irina Koester, Tomasz Kosciolek, Jorden Kreps, Morgan GI Langille, Joslynn Lee, Ruth Ley, Yong-Xin Liu, Erikka Loftfield, Catherine Lozupone, Massoud Maher, Clarisse Marotz, Bryan D Martin, Daniel McDonald, Lauren J McIver, Alexey V Melnik, Jessica L Metcalf, Sydney C Morgan, Jamie Morton, Ahmad Turan Naimey, Jose A Navas-Molina, Louis Felix Nothias, Stephanie B Orchanian, Talima Pearson, Samuel L Peoples, Daniel Petras, Mary Lai Preuss, Elmar Pruesse, Lasse Buur Rasmussen, Adam Rivers, II Michael S Robeson, Patrick Rosenthal, Nicola Segata, Michael Shaffer, Arron Shiffer, Rashmi Sinha, Se Jin Song, John R Spear, Austin D Swafford, Luke R Thompson, Pedro J Torres, Pauline Trinh, Anupriya Tripathi, Peter J Turnbaugh, Sabah Ul-Hasan, Justin JJ van der Hooft, Fernando Vargas, Yoshiki Vázquez-Baeza, Emily Vogtmann, Max von Hippel, William Walters, Yunhu Wan, Mingxun Wang, Jonathan Warren, Kyle C Weber, Chase HD Williamson, Amy D Willis, Zhenjiang Zech Xu, Jesse R Zaneveld, Yilong Zhang, Rob Knight, J Gregory Caporaso

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Transcriptional patterns identify resource controls on the diazotroph Trichodesmium in the Atlantic and Pacific oceans

Mónica Rouco, Kyle R. Frischkorn, Sheean T. Haley, Harriet Alexander, Sonya T. Dyhrman

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Shifting metabolic priorities among key protistan taxa within and below the euphotic zone

Sarah K Hu, Zhenfeng Liu, Harriet Alexander, Victoria Campbell, Paige E Connell, Sonya T Dyhrman, Karla B Heidelberg, David A Caron

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What are the type, direction, and strength of species, community, and ecosystem responses to warming in aquatic mesocosm studies and their dependency on experimental characteristics? A systematic review protocol

Tamar Guy-Haim, Harriet Alexander, Tom W. Bell, Raven L. Bier, Lauren E. Bortolotti, Christian Briseño-Avena, Xiaoli Dong, Alison M. Flanagan, Julia Grosse, Lars Grossmann, Sarah Hasnain, Rachel Hovel, Cora A. Johnston, Dan R. Miller, Mario Muscarella, Akana E. Noto, Alexander J. Reisinger, Heidi J. Smith, Karen Stamieszkin

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Transcriptional response of the harmful raphidophyte Heterosigma akashiwo to nitrate and phosphate stress

Sheean T. Haley, Harriet Alexander, Andrew R. Juhl, Sonya T. Dyhrman

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Conserved transcriptional responses to nutrient stress in bloom-forming algae

Matthew J. Harke, Andrew R. Juhl, Sheean T. Haley, Harriet Alexander, Sonya T. Dyhrman

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Virus-host relationships of marine single-celled eukaryotes resolved from metatranscriptomics

Mohammad Moniruzzaman, Louie L. Wurch, Harriet Alexander, Sonya T. Dyhrman, Christopher J. Gobler, Steven W. Wilhelm

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Phosphorus availability regulates intracellular nucleotides in marine eukaryotic phytoplankton

Elizabeth B Kujawinski, Krista Longnecker, Harriet Alexander, Sonya T Dyhrman, Cara L Fiore, Sheean T Haley, Winifred M Johnson

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Integrating 'big data' into aquatic ecology: Challenges and opportunities

Jennifer M. Durden, Jessica Y. Luo, Harriet Alexander, Alison M. Flanagan, Lars Grossmann

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Probing the evolution, ecology and physiology of marine protists using transcriptomics

David A. Caron, Harriet Alexander, Andrew E. Allen, John M. Archibald, E. Virginia Armbrust, Charles Bachy, Callum J. Bell, Arvind Bharti, Sonya T. Dyhrman, Stephanie M. Guida, Karla B. Heidelberg, Jonathan Z. Kaye, Julia Metzner, Sarah R. Smith, Alexandra Z. Worden

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Variable depth distribution of Trichodesmium clades in the North Pacific Ocean

Mónica Rouco, Sheean T. Haley, Harriet Alexander, Samuel T. Wilson, David M. Karl, Sonya T. Dyhrman

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Functional group-specific traits drive phytoplankton dynamics in the oligotrophic ocean

Harriet Alexander, Mónica Rouco, Sheean T. Haley, Samuel T. Wilson, David M. Karl, Sonya T. Dyhrman

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Metatranscriptome analyses indicate resource partitioning between diatoms in the field

Harriet Alexander, Bethany D. Jenkins, Tatiana A. Rynearson, Sonya T. Dyhrman

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Sixty Years of Sverdrup: A Retrospective of Progress in the Study of Phytoplankton Blooms

Alexis Fischer, Emily Moberg, Harriet Alexander, Emily Brownlee, Kristen Hunter-Cevera, Kathleen Pitz, Sarah Rosengard, Heidi Sosik

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The transcriptome and proteome of the diatom Thalassiosira pseudonana reveal a diverse phosphorus stress response

Sonya T Dyhrman, Bethany D Jenkins, Tatiana A Rynearson, Mak A Saito, Melissa L Mercier, Harriet Alexander, Leann P Whitney, Andrea Drzewianowski, Vladimir V Bulygin, Erin M Bertrand, Zhijin Wu, Claudia Benitez-Nelson, Abigail Heithoff

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Identifying reference genes with stable expression from high throughput sequence data

Harriet Alexander, Bethany D Jenkins, Tatiana A Rynearson, Mak A Saito, Melissa L Mercier, Sonya T Dyhrman

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