computation

Using anvi'o in interactive mode

How to use anvi'o in interactive mode specifically on WHOI's server

`XQuartz` and remote integration for RStudio

RStudio was once my favorite and most often-used IDE. And there are still a lot of reasons to use it, even if you’ve gotten used to something like Spyder or Jupyter. RStudio is a clean IDE that allows you to simultaneously view your filesystem, environment variables, R scripts, and console, and is all very specifically tailored to R, which is important in many cases (R is an amazing but finicky language).

Fixing my matplotlib font woes

How to install MS core fonts with conda

Using `rclone` to manage data on a remote server via Google Drive

There are a lot of reasons to set up Google Drive integration on your remote HPC system. In particular if your institution has provided you access to G Suite, there is a lot of storage available on Google Drive. Sometimes you might want to access files from multiple HPC systems, or have them at your fingertips on your local machine in addition to a remote server. This blog post will go over how to set up and use rclone with Google Drive on your remote server.

Running Jupyter Notebooks Remotely Using Windows

Harriet wrote an awesome blog post here about how to use a Jupyter notebook connected to a remote server via SSH tunneling. Unfortunately, depending on your existing setup on your computer, you may have a few extra steps to wrangle if you have a PC. In this blog post, I’ll highlight what you should do after you get the Jupyter notebook running on the remote. In other words, you should have already gotten to the step where you spin up the Jupyter notebook, as in:

Running Jupyter Notebooks Remotely with Slurm

Using SSH to tunnel into jupyter notebooks deployed remotely on slurm