MMETSP

The osmolyte ties that bind: genomic insights into synthesis and breakdown of organic osmolytes in marine microbes

The production and consumption of organic matter by marine organisms plays a central role in the marine carbon cycle. Labile organic compounds (metabolites) are the major currency of energetic demands and organismal interaction, but these compounds …

DMSP synthesis genes distinguish two types of DMSP producer phenotypes

Dimethylsulfoniopropionate (DMSP) is an important organic carbon and sulfur source in the surface ocean that fuels microbial activity and significantly impacts Earth's climate. After three decades of research, the cellular role(s) of DMSP and …

Re-assembly, quality evaluation, and annotation of 678 microbial eukaryotic reference transcriptomes

**Background** De novo transcriptome assemblies are required prior to analyzing RNAseq data from a species without an existing reference genome or transcriptome. Despite the prevalence of transcriptomic studies, the effects of using different …

Conserved transcriptional responses to nutrient stress in bloom-forming algae

The concentration and composition of bioavailable nitrogen (N) and phosphorus (P) in the upper ocean shape eukaryotic phytoplankton communities and influence their physiological responses. Phytoplankton are known to exhibit similar physiological …

Probing the evolution, ecology and physiology of marine protists using transcriptomics

Protists, which are single-celled eukaryotes, critically influence the ecology and chemistry of marine ecosystems, but genome-based studies of these organisms have lagged behind those of other microorganisms. However, recent transcriptomic studies of …