AMP Alexander Lab Anaconda Aureococcus anophagefferens Bio-GO-SHIP Community-Ecology Computation DMSP Ehux Emiliania Eukaryote Genomics HPC Heterosigma akashiwo MAGs MMETSP MarRef Metagenome Metagenome-Assembled Metatranscriptomics Pangenomes Phaeocystis R RStudio Station ALOHA Sverdrup Tara Oceans Thalassiosira pseudonana Thermal Transcriptomics Trichodesmium anvio aquatic automated pipeline auxtrophy best practices big data biogeochemistry bioinformatics blooms climate change computation computing conda conferences conserved response critical depth hypothesis cyber infrastructure data analysis data reuse data science data sharing data storage data visualization de novo assembly diatom diversity ecological traits estuarine eukaryotes evolution experimental design fonts freshwater functional diversity functional prediction gene expression genomics global global warming harmful algal bloom hiring housekeeping genes jupyter jupyter notebook lab setup marine marine microbial eukaryote matplotlib mesocosm metabolites metabolomics metagenome metagenomics metalloenzyme metatranscriptome metatranscriptomics methodology microbial ecology microbiome microcosm modeling molecular new PI niche partitioning nitrogen nucelosides nutrient nutrient physiology open data osmolytes phosphorus phytoplankton proteomics protist protists python qRT-PCR re-analysis reference gene relative gene expression reproducibility rt-qpcr snakemake software stress sub-euphotic taxonomy transcriptome transcriptomics virus virus-host